G. Logsdon et al. [incl. T. Prodanov]. Complex genetic variation in nearly complete human genomes. Nature [In press]
10.1101/2024.09.24.614721

T. Prodanov, E. Plender, G. Seebohm, S. Meuth, E. Eichler, T. Marschall. Locityper: targeted genotyping of complex polymorphic genes.
Nature Genetics [In revision]
10.1101/2024.05.03.592358

S. Schloissnig, S. Pani et al. [incl. T. Prodanov]. Long-read sequencing and structural variant characterization in 1,019 samples from the 1000 Genomes Project. Nature [In revision]
10.1101/2024.04.18.590093

E. Plender, T. Prodanov, P. Hsieh, E. Nizamis, W. Harvey et al. Structural and genetic diversity in the secreted mucins, MUC5AC and MUC5B.
The American Journal of Human Genetics 111, 1700-1716 (2024),
10.1016/j.ajhg.2024.06.007

T. Prodanov & V. Bansal. A multi-locus approach for accurate variant calling in low-copy repeats using whole-genome sequencing.
Bioinformatics 39, i279–i287 (2023),
10.1093/bioinformatics/btad268

T. Prodanov. Read mapping, variant calling, and copy number variation detection in segmental duplications [Doctoral Thesis].
University of California San Diego (2022),
escholarship.org/uc/item/7nx4c702

T. Prodanov & V. Bansal. Robust and accurate estimation of paralog-specific copy number for duplicated genes using whole-genome sequencing.
Nature Communications 13, 3221 (2022),
10.1038/s41467-022-30930-3

T. Prodanov & V. Bansal. Sensitive alignment using paralogous sequence variants improves long-read mapping and variant calling in segmental duplications. Nucleic Acids Research 48, e114 (2020),
10.1093/nar/gkaa829

M. Ivanov et. al. [incl. T. Prodanov]. Targeted sequencing reveals complex, phenotype-correlated genotypes in cystic fibrosis.
BMC Medical Genomics 11, 13 (2018),
10.1186/s12920-018-0328-z

T. Prodanov. Adaptive randomized algorithms for community detection in graphs. Stochastic Optimization Informatics 11, 29–54 (2015).