T. Prodanov, E. Plender, G. Seebohm, S. Meuth, E. Eichler, T. Marschall. Locityper: targeted genotyping of complex polymorphic genes.
Nature Genetics [In press]
10.1101/2024.05.03.592358

G. Logsdon et al. [incl. T. Prodanov]. Complex genetic variation in nearly complete human genomes. Nature 644, 430–441 (2025),
10.1038/s41586-025-09140-6

S. Schloissnig, S. Pani et al. [incl. T. Prodanov]. Structural variation in 1,019 diverse humans based on long-read sequencing. Nature 644, 442–452 (2025),
10.1038/s41586-025-09290-7

E. Plender, T. Prodanov, P. Hsieh, E. Nizamis, W. Harvey et al. Structural and genetic diversity in the secreted mucins, MUC5AC and MUC5B.
The American Journal of Human Genetics 111, 1700–1716 (2024),
10.1016/j.ajhg.2024.06.007

T. Prodanov & V. Bansal. A multi-locus approach for accurate variant calling in low-copy repeats using whole-genome sequencing.
Bioinformatics 39, i279–i287 (2023),
10.1093/bioinformatics/btad268

T. Prodanov. Read mapping, variant calling, and copy number variation detection in segmental duplications [Doctoral Thesis].
University of California San Diego (2022),
escholarship.org/uc/item/7nx4c702

T. Prodanov & V. Bansal. Robust and accurate estimation of paralog-specific copy number for duplicated genes using whole-genome sequencing.
Nature Communications 13, 3221 (2022),
10.1038/s41467-022-30930-3

T. Prodanov & V. Bansal. Sensitive alignment using paralogous sequence variants improves long-read mapping and variant calling in segmental duplications. Nucleic Acids Research 48, e114 (2020),
10.1093/nar/gkaa829

M. Ivanov et. al. [incl. T. Prodanov]. Targeted sequencing reveals complex, phenotype-correlated genotypes in cystic fibrosis.
BMC Medical Genomics 11, 13 (2018),
10.1186/s12920-018-0328-z

T. Prodanov. Adaptive randomized algorithms for community detection in graphs. Stochastic Optimization Informatics 11, 29–54 (2015).